RetrogeneDB ID: | retro_ocun_1262 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 4:91119027..91119555(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NIP7 | ||
Ensembl ID: | ENSOCUG00000017652 | ||
Aliases: | None | ||
Description: | NIP7, nucleolar pre-rRNA processing protein [Source:HGNC Symbol;Acc:24328] |
Percent Identity: | 60.56 % |
Parental protein coverage: | 98.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MRPLTEEETRVMFEKMAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSE-KILKLAANISGDKLVSLGTC |
M..LTE....V.F.KMA.YI.EN.QL..DR..GT....L.N..VY..SE.KI..L.A.ISGD.L.SLGTC | |
Retrocopy | MWSLTEKVSHVVFGKMARYIEENRQLPGDRCPGT*WVWLYNNHVYHRSE<KIFRLEASISGD*LGSLGTC |
Parental | FGKFTKTHKFRLHITALDYLAPYAKYKVWIKPG-AEQSF-LYGNHVLKSGLGRITENTAQYQGVVVYSMA |
.GKFT.T..FRLHI.A...L...A...VW.K.G.AEQSF...GNHVLKS.LGRIT....Q.QGV.V.SM. | |
Retrocopy | LGKFTETQQFRLHIPARVDLESSAESEVWRKSG<AEQSF<WCGNHVLKSALGRITDSASQCQGVAVCSMT |
Parental | DIPLGFGVAAKSTQDCRKVDPMAIVVFHQADVGEYVRHEE |
DIPLG.GVAAKSTQDCR..DPMAI..F..AD.G.YV..EE | |
Retrocopy | DIPLGSGVAAKSTQDCREADPMAIMLFPPADTGQYVWREE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .47 RPM |
SRP017611_liver | 0 .00 RPM | 1 .85 RPM |