RetrogeneDB ID: | retro_ocun_721 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:123803605..123803886(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NIP7 | ||
Ensembl ID: | ENSOCUG00000017652 | ||
Aliases: | None | ||
Description: | NIP7, nucleolar pre-rRNA processing protein [Source:HGNC Symbol;Acc:24328] |
Percent Identity: | 80. % |
Parental protein coverage: | 52.22 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MRPLTEEETRVMFEKMAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIL-KLAANISGDKLVSLGTC |
M.PLTEE.TRVMF.K.AKYIGENLQLL.D.P.GT.CFRLHND..YYVSEKIL..LAA.ISGDKLVSLGTC | |
Retrocopy | MQPLTEEQTRVMFDKIAKYIGENLQLLID*PYGT*CFRLHNDCRYYVSEKIL<ELAASISGDKLVSLGTC |
Parental | FGKFTKTHKFRLHITALDYLAPYAK |
F.KFTKTHKF.LHI.AL.YLA..AK | |
Retrocopy | FRKFTKTHKFQLHIMALNYLALFAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .47 RPM |
SRP017611_liver | 0 .00 RPM | 1 .85 RPM |