RetrogeneDB ID: | retro_rnor_1674 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:210222421..210222927(-) | ||
Located in intron of: | ENSRNOG00000047767 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nip7 | ||
Ensembl ID: | ENSRNOG00000020391 | ||
Aliases: | Nip7, CGI-37, Nip7p, pEachy | ||
Description: | 60S ribosome subunit biogenesis protein NIP7 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9WV50] |
Percent Identity: | 75. % |
Parental protein coverage: | 93.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | VMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEMILKLAANISG-DKLVSLGTCFGKFTKTHKF |
V..EKIAKYIGENLQLL.DR..GTYCF.LH.D.VYYVSEM..KL..NIS...KLVSLGTCFGKFTKTH.F | |
Retrocopy | VLLEKIAKYIGENLQLLLDRLHGTYCFQLHKDQVYYVSEMSPKLDTNISR<NKLVSLGTCFGKFTKTHTF |
Parental | RLHVTALDFLAPYAKYKVWI-KPGAEQSFLYGNHV-LKSGLGRITENTSQYQGVVVYSMADVPLGFGVAA |
.LHVT.LD.LAPYAKY.....KPGAE.SFL.G.HV..K..L.RITE.TSQY.GVVVYSMADVPLGF.VAA | |
Retrocopy | WLHVTTLDYLAPYAKYE*SL>KPGAEHSFLCGKHV<VKFCLSRITEYTSQYKGVVVYSMADVPLGFRVAA |
Parental | KSTQDCRKVDPMAIVVFHQADIGEYIRHEETL |
KSTQ.C.KVD..A.VVFHQADIGEY...EETL | |
Retrocopy | KSTQECSKVDLIAVVVFHQADIGEYVCQEETL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .61 RPM |
SRP017611_liver | 0 .00 RPM | 5 .72 RPM |