RetrogeneDB ID: | retro_pabe_2258 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:134783008..134783433(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NIP7 | ||
Ensembl ID: | ENSPPYG00000007503 | ||
Aliases: | None | ||
Description: | 60S ribosome subunit biogenesis protein NIP7 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q5R9J1] |
Percent Identity: | 89.51 % |
Parental protein coverage: | 78.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKFR-LHVTALDYLAPYAKYKVWIKPGAEQSF |
LHNDRVYYVSEK..KL.ANISGDKLVSLGTCFGK..KTHKFR..HVTAL.YLAPYAKYKVWIK.GAEQSF | |
Retrocopy | LHNDRVYYVSEKLVKLDANISGDKLVSLGTCFGKVAKTHKFR<VHVTALNYLAPYAKYKVWIKRGAEQSF |
Parental | LYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEE |
LYGNHVLK.GLGRITEN.SQYQGVVVY.MADIPLGFGVAAKSTQDCRKVDPMAIVV.HQADIGEY..HEE | |
Retrocopy | LYGNHVLKYGLGRITENSSQYQGVVVYAMADIPLGFGVAAKSTQDCRKVDPMAIVVLHQADIGEYAQHEE |
Parental | TLT |
TLT | |
Retrocopy | TLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 10 .95 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .93 RPM |
SRP007412_heart | 0 .00 RPM | 4 .52 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .37 RPM |
SRP007412_liver | 0 .00 RPM | 10 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2707 |
Pan troglodytes | retro_ptro_1828 |
Gorilla gorilla | retro_ggor_1886 |