RetrogeneDB ID: | retro_mmus_3250 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:19364824..19365323(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ywhaq | ||
Ensembl ID: | ENSMUSG00000076432 | ||
Aliases: | Ywhaq, 2700028P07Rik, AA409740, AU021156, R74690 | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:MGI Symbol;Acc:MGI:891963] |
Percent Identity: | 63.16 % |
Parental protein coverage: | 59.3 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | DPARRSPSLAMEKTELIQKAKLAEQAERYDDMATC-MKAVTEQGAELSNEERNLLSVAYKNVV-GGRRSA |
D.A...P.L.MEK.ELIQK.KL.E.AE.Y...AT..MKA..EQ..ELSNE..NLL..A.KNVV..G...A | |
Retrocopy | DLAES*PMLTMEKIELIQKVKLTELAEHYENIATT<MKAMMEQDSELSNEF-NLL*LACKNVV<SGSKLA |
Parental | WRVISSIEQKTDTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPESKVFYLKMKGDYFRY |
....SSIEQK.D.S.KKLQLIK.Y..KV..ELRSICTTVL.L.DKYLIANA.N.E.KV.YLKMKGDYF.Y | |
Retrocopy | LTAMSSIEQKSDISNKKLQLIKYY*MKVKLELRSICTTVLKL*DKYLIANAANQECKV-YLKMKGDYFQY |
Parental | LAEVACGDDRKQTIENSQGAYQEAFDISKKE |
LAEV.C....KQ.IE..QGA....FDI.KK. | |
Retrocopy | LAEVVCVNCHKQMIEKLQGAHNGEFDINKKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 71 .61 RPM |
SRP007412_cerebellum | 0 .00 RPM | 42 .60 RPM |
SRP007412_heart | 0 .00 RPM | 9 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 23 .25 RPM |
SRP007412_liver | 0 .00 RPM | 10 .16 RPM |
SRP007412_testis | 0 .00 RPM | 33 .98 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000004925 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015359 | 4 retrocopies | |
Felis catus | ENSFCAG00000007854 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000005383 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014740 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022285 | 3 retrocopies | |
Mus musculus | ENSMUSG00000076432 | 10 retrocopies |
retro_mmus_1076, retro_mmus_1378, retro_mmus_1926, retro_mmus_2250, retro_mmus_2299, retro_mmus_2471, retro_mmus_2689, retro_mmus_3250 , retro_mmus_3308, retro_mmus_406,
|
Nomascus leucogenys | ENSNLEG00000013534 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010482 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000547 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000008104 | 5 retrocopies | |
Sorex araneus | ENSSARG00000012476 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000000871 | 4 retrocopies |