Parental gene:

YWHAQ, ENSECAG00000004925

Aliases:None
Description:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854]
Organism:Horse (Equus caballus)
Coordinates:15:83772973..83814027(+)


>ENSECAG00000004925
ATGGAGAAGACGGAGCTGATCCAGAAGGCGAAGCTGGCCGAGCAGGCCGAGCGCTACGACGACATGGCCACCTGCATGAA
GGCCGTGACGGAGCAGGGCGCCGAGCTGTCCAACGAGGAGCGCAACCTGCTCTCGGTGGCCTACAAGAACGTGGTCGGGG
GCCGCCGGTCCGCCTGGAGGGTCATCTCGAGCATCGAGCAGAAGACCGACACCTCGGACAAGAAGTTGCAGCTGATTAAG
GACTATCGGGAGAAAGTGGAGTCCGAGCTGAGGTCCATCTGCACCACGGTCCTGGAATTGTTGGATAAATATTTAATAGC
CAATGCAACTAATCCGGAAAGTAAGGTCTTCTATCTGAAAATGAAGGGAGATTACTTCCGGTACCTTGCTGAAGTTGCAT
GTGGTGATGATCGAAAACAAACGATAGATAATTCCCAAGGAGCTTACCAAGAAGCTTTTGATATAAGCAAGAAAGAGATG
CAACCCACACACCCAATCCGCCTGGGGCTGGCTCTTAACTTTTCTGTATTTTACTATGAGATCCTTAATAACCCAGAGCT
TGCCTGCACACTGGCTAAAACGGCTTTTGATGAAGCCATTGCAGAACTTGATACACTGAATGAAGACTCGTACAAAGACA
GCACCCTCATCATGCAGTTGCTTAGAGACAACCTAACATTATGGACGTCAGACAGTGCAGGAGAAGAATGTGATGCGGCA
GAAGGGGCAGAAAACTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 93 .50 RPM
SRP021940_embryo 229 .28 RPM
SRP021940_cerebellum 292 .33 RPM
SRP021940_testis 133 .32 RPM
SRP021940_placental_villous 141 .93 RPM
SRP021940_articular_cartilage 69 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000021882 within_species_paralog 3 retrogenes
retro_ecab_202, retro_ecab_31, retro_ecab_624,
Echinops telfairi ENSETEG00000015359 ortholog_one2one 4 retrogenes
retro_etel_1027, retro_etel_1048, retro_etel_235, retro_etel_65,
Felis catus ENSFCAG00000007854 ortholog_one2one 2 retrogenes
retro_fcat_1702, retro_fcat_771,
Myotis lucifugus ENSMLUG00000005383 ortholog_one2one 1 retrogene
retro_mluc_1817,
Monodelphis domestica ENSMODG00000014740 ortholog_one2one 1 retrogene
retro_mdom_1339,
Mus musculus ENSMUSG00000076432 ortholog_one2one 10 retrogenes
retro_mmus_1076, retro_mmus_1378, retro_mmus_1926, retro_mmus_2250, retro_mmus_2299, retro_mmus_2471, retro_mmus_2689, retro_mmus_3250, retro_mmus_3308, retro_mmus_406,
Nomascus leucogenys ENSNLEG00000013534 possible_ortholog 3 retrogenes
retro_nleu_2543, retro_nleu_750, retro_nleu_869,
Oryctolagus cuniculus ENSOCUG00000010482 ortholog_one2one 1 retrogene
retro_ocun_1463,
Otolemur garnettii ENSOGAG00000000547 ortholog_one2one 3 retrogenes
retro_ogar_1047, retro_ogar_1732, retro_ogar_39,
Rattus norvegicus ENSRNOG00000008104 ortholog_one2one 5 retrogenes
retro_rnor_1569, retro_rnor_2065, retro_rnor_2123, retro_rnor_2180, retro_rnor_2746,
Sorex araneus ENSSARG00000012476 ortholog_one2one 4 retrogenes
retro_sara_1, retro_sara_162, retro_sara_179, retro_sara_23,
Tursiops truncatus ENSTTRG00000000871 ortholog_one2one 4 retrogenes
retro_ttru_1006, retro_ttru_1109, retro_ttru_1530, retro_ttru_1536,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_134 64.78 62.86
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Download FASTA sequences of all ENSECAG00000004925 retrocopies