RetrogeneDB ID: | retro_mmus_3493 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:101059008..101059303(+) | ||
Located in intron of: | ENSMUSG00000009670 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081806 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl37 | ||
Ensembl ID: | ENSMUSG00000041841 | ||
Aliases: | Rpl37, 3110005M08Rik | ||
Description: | ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531] |
Percent Identity: | 72.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MTKGTSSFGKR-RNK-THTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLK |
MTKGT.SFGK...N..TH......GSK..H.QKS.CGK.GYPAKRK.K.N.SAKAKRR.T..TGRMRHLK | |
Retrocopy | MTKGTASFGKHPKNR>THCTAGLRGSKDDHYQKSICGKRGYPAKRKQKSNCSAKAKRRSTAETGRMRHLK |
Parental | IVYRRFRHGFREGTTPKPKRAAVAASSSS |
IVY.RFRHGF..GTTPKPKRAAVAA.SSS | |
Retrocopy | IVYGRFRHGFHKGTTPKPKRAAVAATSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 65 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 37 .21 RPM |
SRP007412_heart | 0 .00 RPM | 58 .93 RPM |
SRP007412_kidney | 0 .00 RPM | 45 .29 RPM |
SRP007412_liver | 0 .00 RPM | 67 .59 RPM |
SRP007412_testis | 0 .00 RPM | 51 .18 RPM |