RetrogeneDB ID: | retro_sscr_1220 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | Y:363239..363532(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSSSCG00000025883 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 77.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MTKGTSSFGKRR-NKTHTLCRRCGS-KAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLK |
MTKG.SSFGKRR.NK.HTL...CGS.K.YH.QK.TCGKCGYPAK.KRKYNWS.K.KR.NTTG.G..RHLK | |
Retrocopy | MTKGMSSFGKRR>NKMHTLYQPCGS>KSYHFQKLTCGKCGYPAK*KRKYNWSSKSKRPNTTGIGQKRHLK |
Parental | IVYRRFRHGFREGTTPKPKRAAVAASSSS |
IVY.RFRHGF..G.TPKPKRAA.AASSSS | |
Retrocopy | IVYHRFRHGFGDGATPKPKRAASAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 569 .55 RPM |
SRP014902_testis | 0 .00 RPM | 2139 .24 RPM |
SRP018288_heart | 0 .00 RPM | 318 .38 RPM |
SRP018288_kidney | 0 .00 RPM | 345 .66 RPM |
SRP018288_liver | 0 .00 RPM | 317 .26 RPM |
SRP018288_lung | 0 .00 RPM | 690 .48 RPM |
SRP018856_adipose | 0 .00 RPM | 1378 .84 RPM |
SRP035408_brain | 0 .00 RPM | 723 .95 RPM |
SRP035408_liver | 0 .00 RPM | 476 .97 RPM |