RetrogeneDB ID: | retro_mmus_1813 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 19:16025498..16025717(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl37 | ||
Ensembl ID: | ENSMUSG00000041841 | ||
Aliases: | Rpl37, 3110005M08Rik | ||
Description: | ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531] |
Percent Identity: | 91.78 % |
Parental protein coverage: | 75.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAAS |
KAYHLQK.TCGKCGYP.KRK.KYNWSA.AKRRNTTGT.RMRHLKIVYRRFRHGFREGTTPKPKRAA.AAS | |
Retrocopy | KAYHLQKLTCGKCGYPVKRKKKYNWSARAKRRNTTGTDRMRHLKIVYRRFRHGFREGTTPKPKRAAAAAS |
Parental | SSS |
SSS | |
Retrocopy | SSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 65 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 37 .21 RPM |
SRP007412_heart | 0 .00 RPM | 58 .93 RPM |
SRP007412_kidney | 0 .02 RPM | 45 .29 RPM |
SRP007412_liver | 0 .00 RPM | 67 .59 RPM |
SRP007412_testis | 0 .05 RPM | 51 .18 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_62768 | 201 libraries | 384 libraries | 426 libraries | 54 libraries | 7 libraries |