RetrogeneDB ID: | retro_mmus_3621 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:57753274..57753678(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083821 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl18 | ||
Ensembl ID: | ENSMUSG00000059070 | ||
Aliases: | Rpl18, L18, Rpl18a | ||
Description: | ribosomal protein L18 [Source:MGI Symbol;Acc:MGI:98003] |
Percent Identity: | 61.76 % |
Parental protein coverage: | 71.81 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | MSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSR-ARSRILKAGGKIL |
MS.TN.PPLSLS.MI.K.KLPG..NK.AVV.G..TDDV.IL.V.KL.VC.L.V....A.S.ILKAG.KI. | |
Retrocopy | MSCTNQPPLSLSQMI*KIKLPGQRNKGAVVWGMATDDVWILKVLKLNVCELWVRDQ<A*SHILKAGDKIF |
Parental | TFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK |
T.D...L.S.K..GT.LLSGP.K..EVYR..GKA...P.SH.K.YV.SKGRKF..ARG..AS.GY. | |
Retrocopy | TYD*VVLGSLKNGGTLLLSGPQKCQEVYRYCGKA*EIPYSHIKLYVCSKGRKFKLARG*KAS*GYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 16 .59 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .11 RPM |
SRP007412_heart | 0 .00 RPM | 57 .84 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .77 RPM |
SRP007412_liver | 0 .00 RPM | 37 .99 RPM |
SRP007412_testis | 0 .00 RPM | 37 .14 RPM |