RetrogeneDB ID: | retro_rnor_685 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:45584073..45584400(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl18 | ||
Ensembl ID: | ENSRNOG00000021035 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L18 [Source:UniProtKB/Swiss-Prot;Acc:P12001] |
Percent Identity: | 63.39 % |
Parental protein coverage: | 58.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRA-RSRILKAGGKILTFDQLALESPKGRGTVLLS |
L.G.ENKTAVVV.T.TDD..IL..PKL.VCAL.VSS.A.RS.ILK...KILTFDQLA..S.KG.GT.LLS | |
Retrocopy | LLG*ENKTAVVVETVTDDMQILQTPKL-VCALQVSSQA<RSHILKTWVKILTFDQLAPDSHKGTGTMLLS |
Parental | GPRKGREVY-RHFGKAPGTPHSHTKPYVRSKGRKFERARGRR |
.P.K.R........KAPGT..S.TK.YV.SK..KF..ARGRR | |
Retrocopy | DPQKSRGAW>XXXXKAPGTTQSYTKLYVCSKHWKFQHARGRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 64 .28 RPM |
SRP017611_kidney | 0 .00 RPM | 179 .13 RPM |
SRP017611_liver | 0 .00 RPM | 84 .85 RPM |