Parental gene:

ENSSTOG00000012258

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393474.1:2665101..2668669(-)


>ENSSTOG00000012258
ATGGGAGTCGACATACGCCATAACAAGGACCGAAAGGTTCGGCGCAAGGAGCCCAAGAGCCAGGACATCTACCTAAGGCT
GTTGGTCAAGTTGTACAGGTTTCTGGCTAGACGAACCAATTCTACCTTCAACCAAGTGGTACTGAAGAGGTTGTTCATGA
GTCGCACCAACAGGCCACCTCTCTCCCTCTCCCGGATGATCCGGAAGATGAAGCTTCCTGGCCGAGAAAACAAAACAGCT
GTGGTCGTGGGGACCATAACAGATGATGTTCGTGTTCAGGAGGTGCCCAAACTGAAGGTGTGCGCACTGCGGGTGACCAG
CCGAGCCCGTACCCGAATCCTCAAGGCTGGGGGCAAGATCCTCACCTTTGACCAACTGGCCCTGGACTCCCCCAAGGGCC
GTGGCACGGTCCTACTGTCTGGTCCTCGCAAGGGCCGAGAGGTGTACCGGCATTTTGGCAAGGCTCCTGGGACCCCACAC
AGCCACACTAAACCCTATGTCCGCTCCAAGGGCAGGAAATTCGAGCGTGCCAGAGGTCGGAGGGCCAGCCGTGGGTACAA
AAACTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014872 possible_ortholog 3 retrogenes
Bos taurus ENSBTAG00000015388 possible_ortholog 1 retrogene
Canis familiaris ENSCAFG00000003967 possible_ortholog 7 retrogenes
Choloepus hoffmanni ENSCHOG00000009140 possible_ortholog 6 retrogenes
Callithrix jacchus ENSCJAG00000000377 possible_ortholog 4 retrogenes
Cavia porcellus ENSCPOG00000026334 ortholog_one2one 4 retrogenes
Equus caballus ENSECAG00000021927 possible_ortholog 3 retrogenes
Erinaceus europaeus ENSEEUG00000015872 possible_ortholog 5 retrogenes
Echinops telfairi ENSETEG00000013157 possible_ortholog 6 retrogenes
Felis catus ENSFCAG00000008652 possible_ortholog 4 retrogenes
Homo sapiens ENSG00000063177 possible_ortholog 11 retrogenes
Gorilla gorilla ENSGGOG00000024878 possible_ortholog 7 retrogenes
Loxodonta africana ENSLAFG00000031267 possible_ortholog 1 retrogene
Macropus eugenii ENSMEUG00000000640 ortholog_one2many 1 retrogene
Myotis lucifugus ENSMLUG00000009286 possible_ortholog 12 retrogenes
Macaca mulatta ENSMMUG00000022158 possible_ortholog 3 retrogenes
Monodelphis domestica ENSMODG00000014099 ortholog_many2many 1 retrogene
Mustela putorius furo ENSMPUG00000003891 possible_ortholog 4 retrogenes
Mus musculus ENSMUSG00000059070 ortholog_one2one 11 retrogenes
Nomascus leucogenys ENSNLEG00000004537 possible_ortholog 11 retrogenes
Otolemur garnettii ENSOGAG00000003562 ortholog_one2one 16 retrogenes
Oreochromis niloticus ENSONIG00000006539 ortholog_one2many 1 retrogene
Pongo abelii ENSPPYG00000010206 possible_ortholog 6 retrogenes
Pan troglodytes ENSPTRG00000011245 possible_ortholog 10 retrogenes
Pteropus vampyrus ENSPVAG00000009524 possible_ortholog 10 retrogenes
Rattus norvegicus ENSRNOG00000021035 ortholog_one2many 14 retrogenes
Sarcophilus harrisii ENSSHAG00000006564 ortholog_one2many 2 retrogenes
Sus scrofa ENSSSCG00000025928 possible_ortholog 5 retrogenes
Tupaia belangeri ENSTBEG00000001594 possible_ortholog 18 retrogenes
Tursiops truncatus ENSTTRG00000008187 possible_ortholog 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_261 86.05 67.55
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2. retro_itri_323 84.57 100.00
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3. retro_itri_828 57.43 51.06
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4. retro_itri_853 81.38 100.00
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5. retro_itri_957 63.85 68.62
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Download FASTA sequences of all ENSSTOG00000012258 retrocopies