RetrogeneDB ID: | retro_fcat_718 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:87032416..87032866(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000008652 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.33 % |
Parental protein coverage: | 78.72 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | STFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVSSRA- |
STF.......L..SRTNRPPLSLSRMIRKMKLPGRENKTAVVVG.ITDDVRVQEVPKLKVCALRVSS.A. | |
Retrocopy | STF*YWLHSELVLSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGMITDDVRVQEVPKLKVCALRVSSPAP |
Parental | -RSRILKAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR |
.RSR..KAGGKILTFDQLAL.SPKGCGT.L.SGPRKG.EVYR.FGKAPGTPHSHTKPY.RSKGRKFERAR | |
Retrocopy | ARSRVVKAGGKILTFDQLALHSPKGCGTALRSGPRKGQEVYRYFGKAPGTPHSHTKPYMRSKGRKFERAR |
Parental | GRRASRGYKN |
G.RASRGYKN | |
Retrocopy | GCRASRGYKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 36 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 135 .93 RPM |
SRP017611_liver | 0 .20 RPM | 91 .28 RPM |