RetrogeneDB ID: | retro_mmus_2622 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:6748896..6749459(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl18 | ||
Ensembl ID: | ENSMUSG00000059070 | ||
Aliases: | Rpl18, L18, Rpl18a | ||
Description: | ribosomal protein L18 [Source:MGI Symbol;Acc:MGI:98003] |
Percent Identity: | 80.42 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRK |
MGVD..R.NKD.K.R.K.PKSQDIYLRLL.KLYR.LAR.TNSTFNQ.VLKR.FMS.TN.PPLSLS.MIRK | |
Retrocopy | MGVD<LRCNKD*KFRCKKPKSQDIYLRLLIKLYRCLARWTNSTFNQAVLKRFFMSCTNQPPLSLSLMIRK |
Parental | MKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLL |
MKL.G.ENK..VVVGTVTDDV.ILEVPKLKVCAL.VS.R.RS.ILKA.GKILTFDQLALES.KG.GTVLL | |
Retrocopy | MKLLGWENKSTVVVGTVTDDVQILEVPKLKVCALQVSRRTRSCILKARGKILTFDQLALESTKGQGTVLL |
Parental | SGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYKN |
SG..KG.EVY.HFGKAPGTPHSHTKPYV.SKGR.FE.AR..RAS.GYKN | |
Retrocopy | SGLWKG*EVYQHFGKAPGTPHSHTKPYVHSKGREFEHARSLRASQGYKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 16 .59 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .11 RPM |
SRP007412_heart | 0 .00 RPM | 57 .84 RPM |
SRP007412_kidney | 0 .04 RPM | 37 .77 RPM |
SRP007412_liver | 0 .00 RPM | 37 .99 RPM |
SRP007412_testis | 0 .00 RPM | 37 .14 RPM |