RetrogeneDB - Parental gene ENSRNOG00000021035 details

                            
>ENSRNOG00000021035
ATGGGTGTTGACATTCGCCACAACAAGGACCGAAAGGTTCGGCGCAAGGAGCCCAAGAGCCAGGATATCTACCTGCGGCT

GCTAGTCAAGCTGTACAGGTTTCTGGCCAGACGGACCAACTCCACCTTCAACCAGGTTGTGCTGAAAAGGTTATTTATGA

GCCGAACTAACCGGCCACCTCTGTCCCTGTCCCGAATGATCCGGAAGATGAAGCTTCCTGGTCGGGAGAACAAAACTGCT

GTGGTTGTGGGGACGATCACAGATGATGTGCGGATTCTGGAAGTGCCCAAGCTGAAGGTGTGTGCACTGAGGGTGAGCAG

CCGGGCCCGAAGTCGGATCCTCAAGGCTGGGGGTAAGATCCTGACCTTCGACCAGCTGGCCCTGGAGTCTCCCAAGGGCA

GGGGCACTGTGCTCTTGTCTGGTCCTCGGAAGGGCCGAGAGGTGTACCGACACTTTGGCAAGGCCCCAGGAACTCCACAC

AGCCACACCAAACCCTATGTCCGTTCCAAGGGCCGGAAGTTCGAGCGTGCCAGAGGCCGAAGGGCCAGCCGAGGCTACAA

AAACTAA

Library	Parental gene expression (RPM)
SRP017611_brain	64 .28 RPM
SRP017611_kidney	179 .13 RPM
SRP017611_liver	84 .85 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000014872	possible_ortholog	3 retrogenes	retro_amel_1718, retro_amel_640, retro_amel_740,
Bos taurus	ENSBTAG00000015388	possible_ortholog	1 retrogene	retro_btau_845,
Canis familiaris	ENSCAFG00000003967	possible_ortholog	7 retrogenes	retro_cfam_1285, retro_cfam_1383, retro_cfam_1507, retro_cfam_1853, retro_cfam_2044, retro_cfam_2199, retro_cfam_304,
Choloepus hoffmanni	ENSCHOG00000009140	possible_ortholog	6 retrogenes	retro_chof_1408, retro_chof_1668, retro_chof_1697, retro_chof_2025, retro_chof_427, retro_chof_436,
Callithrix jacchus	ENSCJAG00000000377	possible_ortholog	4 retrogenes	retro_cjac_1659, retro_cjac_2114, retro_cjac_2296, retro_cjac_529,
Cavia porcellus	ENSCPOG00000026334	ortholog_one2many	4 retrogenes	retro_cpor_1062, retro_cpor_1322, retro_cpor_703, retro_cpor_733,
Equus caballus	ENSECAG00000021927	possible_ortholog	3 retrogenes	retro_ecab_478, retro_ecab_530, retro_ecab_880,
Erinaceus europaeus	ENSEEUG00000015872	possible_ortholog	5 retrogenes	retro_eeur_176, retro_eeur_299, retro_eeur_381, retro_eeur_419, retro_eeur_437,
Echinops telfairi	ENSETEG00000013157	possible_ortholog	6 retrogenes	retro_etel_1059, retro_etel_1211, retro_etel_1342, retro_etel_1373, retro_etel_1391, retro_etel_1715,
Felis catus	ENSFCAG00000008652	possible_ortholog	4 retrogenes	retro_fcat_1055, retro_fcat_1268, retro_fcat_1596, retro_fcat_718,
Homo sapiens	ENSG00000063177	possible_ortholog	11 retrogenes	retro_hsap_1073, retro_hsap_1202, retro_hsap_1331, retro_hsap_1617, retro_hsap_1706, retro_hsap_3235, retro_hsap_3794, retro_hsap_3895, retro_hsap_4001, retro_hsap_4111, retro_hsap_772,
Gorilla gorilla	ENSGGOG00000024878	possible_ortholog	7 retrogenes	retro_ggor_1038, retro_ggor_1280, retro_ggor_2200, retro_ggor_2550, retro_ggor_2624, retro_ggor_847, retro_ggor_937,
Loxodonta africana	ENSLAFG00000031267	possible_ortholog	1 retrogene	retro_lafr_879,
Macropus eugenii	ENSMEUG00000000640	ortholog_one2many	1 retrogene	retro_meug_1568,
Myotis lucifugus	ENSMLUG00000009286	possible_ortholog	12 retrogenes	retro_mluc_1440, retro_mluc_1442, retro_mluc_1462, retro_mluc_1736, retro_mluc_1791, retro_mluc_1912, retro_mluc_2023, retro_mluc_480, retro_mluc_729, retro_mluc_786, retro_mluc_886, retro_mluc_904,
Macaca mulatta	ENSMMUG00000022158	possible_ortholog	3 retrogenes	retro_mmul_32, retro_mmul_55, retro_mmul_92,
Monodelphis domestica	ENSMODG00000014099	ortholog_many2many	1 retrogene	retro_mdom_906,
Mustela putorius furo	ENSMPUG00000003891	possible_ortholog	4 retrogenes	retro_mputfur_135, retro_mputfur_1410, retro_mputfur_529, retro_mputfur_974,
Mus musculus	ENSMUSG00000059070	ortholog_one2many	11 retrogenes	retro_mmus_1655, retro_mmus_2025, retro_mmus_2091, retro_mmus_2303, retro_mmus_2462, retro_mmus_2622, retro_mmus_2790, retro_mmus_3424, retro_mmus_3621, retro_mmus_726, retro_mmus_740,
Nomascus leucogenys	ENSNLEG00000004537	possible_ortholog	11 retrogenes	retro_nleu_1124, retro_nleu_1136, retro_nleu_1410, retro_nleu_1799, retro_nleu_2006, retro_nleu_2380, retro_nleu_2464, retro_nleu_2597, retro_nleu_547, retro_nleu_577, retro_nleu_976,
Otolemur garnettii	ENSOGAG00000003562	ortholog_one2many	16 retrogenes	retro_ogar_1167, retro_ogar_1474, retro_ogar_1563, retro_ogar_1753, retro_ogar_1978, retro_ogar_2394, retro_ogar_2419, retro_ogar_2527, retro_ogar_2613, retro_ogar_2833, retro_ogar_3319, retro_ogar_3456, retro_ogar_3458, retro_ogar_3459, retro_ogar_492, retro_ogar_996,
Oreochromis niloticus	ENSONIG00000006539	ortholog_one2many	1 retrogene	retro_onil_43,
Pongo abelii	ENSPPYG00000010206	possible_ortholog	6 retrogenes	retro_pabe_1003, retro_pabe_1337, retro_pabe_1402, retro_pabe_2681, retro_pabe_3100, retro_pabe_3176,
Pan troglodytes	ENSPTRG00000011245	possible_ortholog	10 retrogenes	retro_ptro_1084, retro_ptro_1155, retro_ptro_2187, retro_ptro_2574, retro_ptro_2649, retro_ptro_2790, retro_ptro_540, retro_ptro_730, retro_ptro_822, retro_ptro_908,
Pteropus vampyrus	ENSPVAG00000009524	possible_ortholog	10 retrogenes	retro_pvam_101, retro_pvam_1034, retro_pvam_1244, retro_pvam_1376, retro_pvam_1444, retro_pvam_427, retro_pvam_785, retro_pvam_883, retro_pvam_969, retro_pvam_990,
Sarcophilus harrisii	ENSSHAG00000006564	ortholog_one2many	2 retrogenes	retro_shar_571, retro_shar_659,
Sus scrofa	ENSSSCG00000025928	possible_ortholog	5 retrogenes	retro_sscr_1028, retro_sscr_118, retro_sscr_836, retro_sscr_864, retro_sscr_925,
Ictidomys tridecemlineatus	ENSSTOG00000012258	ortholog_one2many	5 retrogenes	retro_itri_261, retro_itri_323, retro_itri_828, retro_itri_853, retro_itri_957,
Tupaia belangeri	ENSTBEG00000001594	possible_ortholog	18 retrogenes	retro_tbel_1006, retro_tbel_126, retro_tbel_1591, retro_tbel_1599, retro_tbel_1600, retro_tbel_1719, retro_tbel_2618, retro_tbel_2628, retro_tbel_277, retro_tbel_2984, retro_tbel_3527, retro_tbel_3529, retro_tbel_3608, retro_tbel_3609, retro_tbel_4409, retro_tbel_4473, retro_tbel_4590, retro_tbel_737,
Tursiops truncatus	ENSTTRG00000008187	possible_ortholog	3 retrogenes	retro_ttru_1127, retro_ttru_1770, retro_ttru_42,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_rnor_516	72.61	80.32	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_rnor_685	63.39	58.51	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_rnor_856	82.17	67.55	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_rnor_857	82.17	67.55	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_rnor_1068	70.59	53.72	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_rnor_1072	85.53	84.04	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_rnor_1154	70.19	54.79	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_rnor_1186	79.08	80.32	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_rnor_1337	68.21	79.26	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_rnor_1359	92.11	100.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_rnor_2174	80.10	100.00	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_rnor_2224	56.82	68.09	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_rnor_2847	60.81	77.13	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_rnor_2890	55.86	57.45	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSRNOG00000021035 retrocopies

Parental gene:	Rpl18, ENSRNOG00000021035
Aliases:	None
Description:	60S ribosomal protein L18 [Source:UniProtKB/Swiss-Prot;Acc:P12001]
Organism:	*Rat (Rattus norvegicus)*
Coordinates:	1:102779720..102782381(+)

Parental gene:

Rpl18, ENSRNOG00000021035