RetrogeneDB ID: | retro_cpor_1322 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_7:46045400..46045956(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18 | ||
Ensembl ID: | ENSCPOG00000026334 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L18 [Source:UniProtKB/TrEMBL;Acc:H0W177] |
Percent Identity: | 69.84 % |
Parental protein coverage: | 99.47 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMK |
GVDI..NKD.KV..KEP..QDIYLRLLVKLYRFLA..TNS.FNQ.VLKRLFMS.TN..PLSLS..I..MK | |
Retrocopy | GVDICYNKDQKVLHKEPQIQDIYLRLLVKLYRFLAQQTNSAFNQAVLKRLFMSGTN*APLSLSWVIWEMK |
Parental | LPGRENKTAVVVGTVTDDVRVLEVPKLKVCALRVTSRARSR-ILKAGGKILTFDQLALESPKGRGTVLLS |
.PGRENKTAVVV..V.DD..VLEV.KLKVC.L.VTS.A.S..ILKA.GKILTFDQLAL.S..G..TVLLS | |
Retrocopy | PPGRENKTAVVV-EVSDDMQVLEVSKLKVCILGVTSQAHSA<ILKARGKILTFDQLALDSRNGHSTVLLS |
Parental | GPRKGREVYRHFGKAPG-TPHSHTKPYVRSKGRKFERARGRRASRGYKN |
GP.K..E..RHF.KAPG..PHSHTKPY..SK.......R.R.ASR.YKN | |
Retrocopy | GPHKDQEMCRHFSKAPG<SPHSHTKPYLCSKVQELDCTRSRWASRAYKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 83 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 155 .88 RPM |
SRP017611_liver | 0 .00 RPM | 85 .88 RPM |
SRP040447_lung | 0 .00 RPM | 269 .03 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 210 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014872 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000026334 | 4 retrocopies | |
Felis catus | ENSFCAG00000008652 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000024878 | 7 retrocopies | |
Macropus eugenii | ENSMEUG00000000640 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022158 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000014099 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000003891 | 4 retrocopies | |
Mus musculus | ENSMUSG00000059070 | 11 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004537 | 11 retrocopies | |
Otolemur garnettii | ENSOGAG00000003562 | 16 retrocopies | |
Oreochromis niloticus | ENSONIG00000006539 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010206 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000021035 | 14 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006564 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000025928 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000012258 | 5 retrocopies |