RetrogeneDB ID: | retro_fcat_1055 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:93544469..93545026(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000008652 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.38 % |
Parental protein coverage: | 98.94 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKL |
VDI.HNKD.KV..KEPK.Q.IYLR.LV.L..FLAR.T.ST..QVVLK.LF...TN.PPLSLS.MIRKMKL | |
Retrocopy | VDICHNKD*KVWCKEPKDQGIYLRPLVRLSGFLAR*TDSTISQVVLKKLFKNYTNQPPLSLSWMIRKMKL |
Parental | PGRENKTAVVVGTITDDVRV-QEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALDSPKGCGTVLLSG |
PG.E.KTAV.VGT.TDDV.V.QEVPKLKV..L..SS.A.S.ILKAGG.IL.FD.LA.D.PK.CGT.LLS. | |
Retrocopy | PGKEDKTAVAVGTKTDDVCV<QEVPKLKVDVLQASSHAQSCILKAGGEILAFDLLAPDFPKDCGTILLSS |
Parental | PRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYKN |
P.K..EVYR.F.K.PGT.HSHTK.....KG.K.E..RG.RAS.G..N | |
Retrocopy | PCKS*EVYRYFSKVPGTLHSHTKSCM*FKGQKLEWPRGFRASLGH*N |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 36 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 135 .93 RPM |
SRP017611_liver | 0 .00 RPM | 91 .28 RPM |