RetrogeneDB ID: | retro_mmus_2091 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:132215000..132215297(-) | ||
Located in intron of: | ENSMUSG00000086756 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl18 | ||
Ensembl ID: | ENSMUSG00000059070 | ||
Aliases: | Rpl18, L18, Rpl18a | ||
Description: | ribosomal protein L18 [Source:MGI Symbol;Acc:MGI:98003] |
Percent Identity: | 91.92 % |
Parental protein coverage: | 52.66 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKM |
MGVDI.HNKD.KVRRKEPKSQDIYLRLLVKLYRFLARRT.STFNQVVLKR.FMSRTNRPPLSLSRMIRKM | |
Retrocopy | MGVDICHNKDQKVRRKEPKSQDIYLRLLVKLYRFLARRTSSTFNQVVLKRSFMSRTNRPPLSLSRMIRKM |
Parental | KLPGRENKTAVVVGTVTDDVRILEVPKLK |
KLPGRENKT.V.VGTV.DDVRIL.VPKLK | |
Retrocopy | KLPGRENKTIVGVGTVRDDVRILQVPKLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 16 .59 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .11 RPM |
SRP007412_heart | 0 .03 RPM | 57 .84 RPM |
SRP007412_kidney | 0 .02 RPM | 37 .77 RPM |
SRP007412_liver | 0 .00 RPM | 37 .99 RPM |
SRP007412_testis | 0 .00 RPM | 37 .14 RPM |