RetrogeneDB ID: | retro_mmus_509 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:162500718..162500955(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | 1110001A16Rik | ||
Ensembl ID: | ENSMUSG00000062691 | ||
Aliases: | None | ||
Description: | RIKEN cDNA 1110001A16 gene [Source:MGI Symbol;Acc:MGI:1915804] |
Percent Identity: | 61.25 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MARIMEPLARKIFKGVLAAELVGVAGAYCLFKKMHSSQDFRQTMSKKFPFILEVYYKSIEQSGMYGVREK |
M.....P.ARKIF.GVL.AELVG..GA..LFKKM..SQ.FRQ.MS.K.P.IL...YKSIEQ..MY.VR.. | |
Retrocopy | MTQTLGPPARKIFGGVLVAELVGGFGA*FLFKKMNLSQHFRQ-MSEKIPLILQAHYKSIEQY*MYVVRG* |
Parental | DEEKWLTSKN |
D.EK.L.SK. | |
Retrocopy | DQEKYLESKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 3 .15 RPM |
SRP007412_cerebellum | 0 .00 RPM | 2 .17 RPM |
SRP007412_heart | 0 .00 RPM | 6 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 3 .85 RPM |
SRP007412_liver | 0 .00 RPM | 3 .47 RPM |
SRP007412_testis | 0 .00 RPM | 1 .60 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017579 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013008 | 2 retrocopies | |
Felis catus | ENSFCAG00000023228 | 2 retrocopies | |
Homo sapiens | ENSG00000218739 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000025368 | 2 retrocopies | |
Mus musculus | ENSMUSG00000062691 | 2 retrocopies |
retro_mmus_426, retro_mmus_509 ,
|
Pongo abelii | ENSPPYG00000029876 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000033858 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000040303 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000020689 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000006884 | 7 retrocopies |