RetrogeneDB ID:

retro_ttru_274

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_175:148844..149083(-)
Located in intron of:ENSTTRG00000015988
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000006884
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_274
ATAGCCCGTACTATGGATCCACTGGCAAAGCAGATCTTTAAAGGAGTTTTAGTAGCTGAACTTGTGGGCATTTTTGGAGC
ATATTTTTGTTCAGAAAGATGAATACAAGTCAAGAGTTCAGGCAAACAATGAGCAAGAAATTCTCCTTCATCTTGGAAGT
TTATTGCAAGTCCACTGAACACTCTGGAATGTACGGAATCAGAGAGCAAGAGCAAGAAAAATGGCTGAACAGCAAAAAT

ORF - retro_ttru_274 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.65 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMARTMDPLAKKIFKGVLVAELVGVFGAYF-LFKKMNTSQDFRQTMSKKFPFILEVYYKSIEHSGMYGIRE
.ARTMDPLAK.IFKGVLVAELVG.FGAYF.LF.KMNTSQ.FRQTMSKKF.FILEVY.KS.EHSGMYGIRE
RetrocopyIARTMDPLAKQIFKGVLVAELVGIFGAYF<LFRKMNTSQEFRQTMSKKFSFILEVYCKSTEHSGMYGIRE
ParentalQDQEKWLNSKN
Q.QEKWLNSKN
RetrocopyQEQEKWLNSKN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_274 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_274 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 26 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000175791 retrocopy
Choloepus hoffmanni ENSCHOG000000130082 retrocopies
Felis catus ENSFCAG000000232282 retrocopies
Homo sapiens ENSG000002187392 retrocopies
Gorilla gorilla ENSGGOG000000253682 retrocopies
Mus musculus ENSMUSG000000626912 retrocopies
Pongo abelii ENSPPYG000000298762 retrocopies
Pan troglodytes ENSPTRG000000338582 retrocopies
Rattus norvegicus ENSRNOG000000403032 retrocopies
Sus scrofa ENSSSCG000000206892 retrocopies
Tursiops truncatus ENSTTRG00000006884 7 retrocopies



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