RetrogeneDB ID: | retro_hsap_2312 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:128835155..128835352(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AC007390.5 | ||
Ensembl ID: | ENSG00000218739 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.18 % |
Parental protein coverage: | 82.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MARTLEPLAKKIFKGVLVAEL-VGVFGAYFLFSKMHTSQDFRQTMSKKYPFILEVYYKSTEKSGMYG |
...T.EP.AKKIFKG.L.AEL..G..GAYFLF..M..S..F.Q.MSKK.P.ILEVYYKSTE.S.M.G | |
Retrocopy | ITHTKEPRAKKIFKGFLEAEL<LGSLGAYFLFN*MNRSHNFKQIMSKKFPIILEVYYKSTEQSEMCG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 35 .80 RPM |
bodymap2_adrenal | 0 .00 RPM | 49 .97 RPM |
bodymap2_brain | 0 .00 RPM | 70 .51 RPM |
bodymap2_breast | 0 .00 RPM | 63 .09 RPM |
bodymap2_colon | 0 .00 RPM | 67 .29 RPM |
bodymap2_heart | 0 .00 RPM | 70 .21 RPM |
bodymap2_kidney | 0 .00 RPM | 49 .92 RPM |
bodymap2_liver | 0 .00 RPM | 25 .88 RPM |
bodymap2_lung | 0 .00 RPM | 38 .15 RPM |
bodymap2_lymph_node | 0 .00 RPM | 44 .15 RPM |
bodymap2_ovary | 0 .00 RPM | 68 .39 RPM |
bodymap2_prostate | 0 .00 RPM | 66 .16 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 45 .71 RPM |
bodymap2_testis | 0 .00 RPM | 60 .52 RPM |
bodymap2_thyroid | 0 .00 RPM | 59 .62 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 39 .20 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1687 |
Gorilla gorilla | retro_ggor_1755 |
Pongo abelii | retro_pabe_2045 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017579 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013008 | 2 retrocopies | |
Felis catus | ENSFCAG00000023228 | 2 retrocopies | |
Homo sapiens | ENSG00000218739 | 2 retrocopies |
retro_hsap_2312 , retro_hsap_4294,
|
Gorilla gorilla | ENSGGOG00000025368 | 2 retrocopies | |
Mus musculus | ENSMUSG00000062691 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000029876 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000033858 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000040303 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000020689 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000006884 | 7 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |