RetrogeneDB ID: | retro_mmus_836 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:117420802..117421127(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083705 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps23 | ||
Ensembl ID: | ENSMUSG00000049517 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:MGI Symbol;Acc:MGI:1913725] |
Percent Identity: | 96.4 % |
Parental protein coverage: | 76.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFG-GASHAKGIVL-EKVGVEAKQPNSAIRK |
MGKCRGL.TARKLRSHRRDQKWHDKQYKKAHLGTALKANPFG.GASHAKGIVL.EKVGVEAKQPNSA.RK | |
Retrocopy | MGKCRGLQTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFG<GASHAKGIVL<EKVGVEAKQPNSAVRK |
Parental | CVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKG |
CVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKG | |
Retrocopy | CVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 40 .46 RPM |
SRP007412_cerebellum | 0 .00 RPM | 22 .32 RPM |
SRP007412_heart | 0 .09 RPM | 60 .70 RPM |
SRP007412_kidney | 0 .00 RPM | 58 .10 RPM |
SRP007412_liver | 0 .00 RPM | 55 .65 RPM |
SRP007412_testis | 0 .09 RPM | 38 .47 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_10306 | 69 libraries | 28 libraries | 211 libraries | 307 libraries | 457 libraries |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000011136 | 1 retrocopy | |
Bos taurus | ENSBTAG00000013358 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000011247 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000003578 | 4 retrocopies | |
Mus musculus | ENSMUSG00000049517 | 12 retrocopies | |
Pongo abelii | ENSPPYG00000015608 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000016580 | 12 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008347 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000014491 | 6 retrocopies |