RetrogeneDB ID: | retro_pabe_1538 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 17_random:15714196..15714541(+) | ||
Located in intron of: | ENSPPYG00000008951 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSPPYG00000015608 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
Percent Identity: | 78.26 % |
Parental protein coverage: | 77.62 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGG----ASHAKGIVLEKVGVEAKQPNSAI |
.GKC.GLR.A.KL..H..DQKWH.KQYKKAHLGTALKANPF.G....ASHAKGIVLEK.GVE.KQPNSAI | |
Retrocopy | IGKCHGLRAAMKLHAH**DQKWHEKQYKKAHLGTALKANPFEGCMRGASHAKGIVLEKGGVETKQPNSAI |
Parental | RKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHA |
RKC...QLIKN.KKITAFVPN.GCLNFIE.ND.VLVAGFG.KGH. | |
Retrocopy | RKCASIQLIKNSKKITAFVPNGGCLNFIEKNDKVLVAGFG*KGHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 66 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 93 .75 RPM |
SRP007412_heart | 0 .00 RPM | 91 .24 RPM |
SRP007412_kidney | 0 .03 RPM | 170 .84 RPM |
SRP007412_liver | 0 .00 RPM | 127 .18 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1778 |
Pan troglodytes | retro_ptro_1190 |
Gorilla gorilla | retro_ggor_2237 |
Macaca mulatta | retro_mmul_1239 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000011136 | 1 retrocopy | |
Bos taurus | ENSBTAG00000013358 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000011247 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000001813 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000012931 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003578 | 4 retrocopies | |
Mus musculus | ENSMUSG00000049517 | 12 retrocopies | |
Pongo abelii | ENSPPYG00000015608 | 7 retrocopies |
retro_pabe_1538 , retro_pabe_1585, retro_pabe_19, retro_pabe_2515, retro_pabe_2567, retro_pabe_2716, retro_pabe_3129,
|
Pteropus vampyrus | ENSPVAG00000002083 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000016580 | 12 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008347 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000014491 | 6 retrocopies | |
Vicugna pacos | ENSVPAG00000009427 | 7 retrocopies |