RetrogeneDB ID: | retro_acar_85 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 2:131699555..131699876(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000025255 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSACAG00000011136 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
Percent Identity: | 83.78 % |
Parental protein coverage: | 77.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV |
M.KC.GL.TARKLR.HRRDQKW.....KKAHL.TALK.N.FGGASH.KGIVLEKVGVEAKQPNS.IRKCV | |
Retrocopy | MCKCCGLHTARKLRNHRRDQKW----HKKAHLDTALKSNSFGGASHDKGIVLEKVGVEAKQPNSSIRKCV |
Parental | RVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHA |
RVQLIKNGKKITAFVP..GC.NFIEENDEVLVAGFGRK.HA | |
Retrocopy | RVQLIKNGKKITAFVPKYGC*NFIEENDEVLVAGFGRKDHA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 3188 .19 RPM |
SRP009831_brain | 0 .00 RPM | 208 .53 RPM |
SRP009831_dewlap | 0 .00 RPM | 293 .92 RPM |
SRP009831_embryo | 0 .00 RPM | 946 .56 RPM |
SRP009831_heart | 0 .00 RPM | 376 .09 RPM |
SRP009831_liver | 0 .00 RPM | 747 .98 RPM |
SRP009831_lung | 0 .00 RPM | 458 .54 RPM |
SRP009831_ovary | 0 .00 RPM | 210 .38 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 220 .28 RPM |