RetrogeneDB ID: | retro_mmus_98 | ||
Retrocopy location | Organism: | Mouse (Mus musculus) | |
| Coordinates: | 12:87644245..87644467(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMUSG00000093844 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | Ubl5 | ||
| Ensembl ID: | ENSMUSG00000084786 | ||
| Aliases: | Ubl5, 1110030M22Rik, beacon | ||
| Description: | ubiquitin-like 5 [Source:MGI Symbol;Acc:MGI:1913427] |
Retrocopy-Parental alignment summary:
>retro_mmus_98
ATGATTGAGGTGGTTTGCAATGACCGTCTAGGAAAGAAAGTCCGAGTGAAGTGCAACACCGATGATACCATTGGTGACTT
GAAGAAACTGATAGCGGCTCAAACTGGCACCCGCTGGAATAAGATCATTCTTAAAAAGTGGTACACAATTTATAAGGACC
ACGTGTCTCTGGGAGACTATGAAATCCATGATGGGATGAACCTGGAGCTTTATTACCAGTAG
ORF - retro_mmus_98 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 97.26 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLEL |
| MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKI.LKKWYTI.KDHVSLGDYEIHDGMNLEL | |
| Retrocopy | MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIILKKWYTIYKDHVSLGDYEIHDGMNLEL |
| Parental | YYQ |
| YYQ | |
| Retrocopy | YYQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 50 .88 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 44 .94 RPM |
| SRP007412_heart | 0 .00 RPM | 51 .43 RPM |
| SRP007412_kidney | 0 .00 RPM | 64 .31 RPM |
| SRP007412_liver | 0 .00 RPM | 39 .87 RPM |
| SRP007412_testis | 0 .00 RPM | 37 .64 RPM |
RNA Polymerase II activity near the 5' end of retro_mmus_98 was not detected
No EST(s) were mapped for retro_mmus_98 retrocopy.
No TSS is located nearby retro_mmus_98 retrocopy 5' end.
retro_mmus_98 was not experimentally validated.