RetrogeneDB ID:

retro_nleu_1645

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397302.1:7743813..7744126(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL36
Ensembl ID:ENSNLEG00000013689
Aliases:None
Description:60S ribosomal protein L36 [Source:UniProtKB/TrEMBL;Acc:G1RTM2]


Retrocopy-Parental alignment summary:






>retro_nleu_1645
ATGACTCTGCACTACCCTATAGCTGTGGGCCTCAACAAGGGCCACAAGGTGACCAAGAATGTGAGCAAGCCCAGGCACAG
CCACCGTGAGCGCCTGACCAAACTCACTAAATTTGTGTGGGACATGATCCCAGAGGTGTGTGGCATCACCCCTAACGAGT
GGCGTGGCATGGAGTTACTGAAGGTCTCCAAGGTCAAACGGGTCCTCAAATTCATCAAGAAAAGGGTAGGGACAAACATC
TGTGCCAAGAGAAGGCCGGAAGATGCTGAGCAACGTCCTGGCTGCCATGAGGAAAGCAGCTGCCAAGAAGGAC

ORF - retro_nleu_1645 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.25 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL
M.L.YP.AVGLNKGHKVTKNVSKPRHS.R..RLTK.TKFV.DMI.EVCG..P.E.R.MELLKVSK.KR.L
RetrocopyMTLHYPIAVGLNKGHKVTKNVSKPRHSHRE-RLTKLTKFVWDMIPEVCGITPNEWRGMELLKVSKVKRVL
ParentalKFIKKRVGTHIRAKRKREE-LSNVLAAMRKAAAKKD
KFIKKRVGT.I.AKR..E..LSNVLAAMRKAAAKKD
RetrocopyKFIKKRVGTNICAKRRPED>LSNVLAAMRKAAAKKD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1645 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 107 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000123496 retrocopies
Bos taurus ENSBTAG000000017943 retrocopies
Callithrix jacchus ENSCJAG000000170722 retrocopies
Dasypus novemcinctus ENSDNOG000000051638 retrocopies
Gorilla gorilla ENSGGOG0000001536511 retrocopies
Latimeria chalumnae ENSLACG000000151611 retrocopy
Macropus eugenii ENSMEUG000000027434 retrocopies
Monodelphis domestica ENSMODG000000012752 retrocopies
Mustela putorius furoENSMPUG000000061666 retrocopies
Mus musculus ENSMUSG000000578639 retrocopies
Nomascus leucogenys ENSNLEG00000013689 15 retrocopies
Otolemur garnettii ENSOGAG0000002704912 retrocopies
Pan troglodytes ENSPTRG0000001033813 retrocopies
Rattus norvegicus ENSRNOG000000334735 retrocopies
Sarcophilus harrisii ENSSHAG000000134928 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000205182 retrocopies



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