RetrogeneDB ID: | retro_btau_139 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 1:98127788..98128106(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000045991 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL36 | ||
Ensembl ID: | ENSBTAG00000001794 | ||
Aliases: | RPL36, RPL35 | ||
Description: | 60S ribosomal protein L36 [Source:UniProtKB/Swiss-Prot;Acc:Q3T171] |
Percent Identity: | 93.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MALRYPMAVGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL |
MAL.YPMAVGLNKGHKVTKN.GKPRHS.RRG.LTKHTKFVRDMIREVCG.APYERRAMELLKVSKDKRAL | |
Retrocopy | MALCYPMAVGLNKGHKVTKNMGKPRHSCRRGHLTKHTKFVRDMIREVCGLAPYERRAMELLKVSKDKRAL |
Parental | KFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD |
KFIKKRVGTHI.AKR.REELSNVLAAMRKAAAKKD | |
Retrocopy | KFIKKRVGTHIHAKREREELSNVLAAMRKAAAKKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 8 .80 RPM |
ERP005899_muscle | 0 .05 RPM | 353 .21 RPM |
SRP017611_brain | 0 .05 RPM | 23 .34 RPM |
SRP017611_kidney | 0 .06 RPM | 57 .49 RPM |
SRP017611_liver | 0 .00 RPM | 48 .93 RPM |
SRP030211_testis | 0 .05 RPM | 64 .01 RPM |