RetrogeneDB ID: | retro_mmus_193 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:73175426..73175741(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000066478 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl36 | ||
Ensembl ID: | ENSMUSG00000057863 | ||
Aliases: | None | ||
Description: | ribosomal protein L36 [Source:MGI Symbol;Acc:MGI:1860603] |
Percent Identity: | 98.06 % |
Parental protein coverage: | 98.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL |
MALRYPMAVGLNKGHKVTKNVSKPRHSRRRG.LTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL | |
Retrocopy | MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGCLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL |
Parental | KFIKKRVGTHIRAKRKREELSNVLAAMRKAAAK |
KFIKKRVGTHIRAKRKREELSNVLAAMRKAA.K | |
Retrocopy | KFIKKRVGTHIRAKRKREELSNVLAAMRKAAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 14 .25 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .60 RPM |
SRP007412_heart | 0 .09 RPM | 36 .86 RPM |
SRP007412_kidney | 0 .02 RPM | 17 .61 RPM |
SRP007412_liver | 0 .05 RPM | 23 .57 RPM |
SRP007412_testis | 0 .00 RPM | 33 .76 RPM |