RetrogeneDB ID:

retro_ogar_358

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873520.1:54480158..54480473(+)
Located in intron of:ENSOGAG00000008013
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000027049
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_358
ATGGCTTTGCACTACCCCATGGCCATGGGTCTCAACAAGGGCCACAAGGTGACCAAGAACGTGAGCAAACCGAGGCATAG
CTGCCACCTCAGGTGTCTCACCAAACACACGAAGTTCGTGCAGGACATGATCCAAGAAGTATGTGGTTTTGCCCCATATG
AGCAGTGTGTCATGGAGCAGCTCAAGGTCTCCAAGGACAAATGGGCCCTCAAGTTCATCAAGAAAAGAGTGGGGACACAC
ATCCATGCTAATAGGATGCAGGAAGAGCTGAGCAACGTCCTGGCTGCCATGAGGAAAGCAGGTGCCAAGAAGGAC

ORF - retro_ogar_358 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.9 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL
MAL.YPMA.GLNKGHKVTKNVSKPRHS.....LTKHTKFV.DMI.EVCGFAPYE...ME.LKVSKDK.AL
RetrocopyMALHYPMAMGLNKGHKVTKNVSKPRHSCHLRCLTKHTKFVQDMIQEVCGFAPYEQCVMEQLKVSKDKWAL
ParentalKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD
KFIKKRVGTHI.A.R..EELSNVLAAMRKA.AKKD
RetrocopyKFIKKRVGTHIHANRMQEELSNVLAAMRKAGAKKD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_358 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 157 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000123496 retrocopies
Bos taurus ENSBTAG000000017943 retrocopies
Callithrix jacchus ENSCJAG000000170722 retrocopies
Cavia porcellus ENSCPOG000000228393 retrocopies
Dasypus novemcinctus ENSDNOG000000051638 retrocopies
Echinops telfairi ENSETEG0000001294315 retrocopies
Felis catus ENSFCAG000000118385 retrocopies
Homo sapiens ENSG0000013025513 retrocopies
Gorilla gorilla ENSGGOG0000001536511 retrocopies
Latimeria chalumnae ENSLACG000000151611 retrocopy
Macropus eugenii ENSMEUG000000027434 retrocopies
Monodelphis domestica ENSMODG000000012752 retrocopies
Mustela putorius furoENSMPUG000000061666 retrocopies
Mus musculus ENSMUSG000000578639 retrocopies
Nomascus leucogenys ENSNLEG0000001368915 retrocopies
Otolemur garnettii ENSOGAG00000027049 12 retrocopies
Pongo abelii ENSPPYG0000000943112 retrocopies
Pan troglodytes ENSPTRG0000001033813 retrocopies
Rattus norvegicus ENSRNOG000000334735 retrocopies
Sarcophilus harrisii ENSSHAG000000134928 retrocopies
Sus scrofa ENSSSCG000000300102 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000205182 retrocopies



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