RetrogeneDB ID: | retro_mmus_652 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:69566047..69566361(-) | ||
Located in intron of: | ENSMUSG00000069601 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl36 | ||
Ensembl ID: | ENSMUSG00000057863 | ||
Aliases: | None | ||
Description: | ribosomal protein L36 [Source:MGI Symbol;Acc:MGI:1860603] |
Percent Identity: | 83.96 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL |
M.LRYPMAVGLNKGHKVT.NVSKPRHSRR.G.LTKHTKFVRDMIREVC.FAPY..R.MELLKVSKDK.AL | |
Retrocopy | MVLRYPMAVGLNKGHKVTNNVSKPRHSRRHGSLTKHTKFVRDMIREVCSFAPYKWRTMELLKVSKDKCAL |
Parental | -KFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD |
..F.KKRVG.H..AKRKREELSN.LAAMRK.AAKKD | |
Retrocopy | <QFVKKRVGMHSCAKRKREELSNMLAAMRKVAAKKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 14 .25 RPM |
SRP007412_cerebellum | 0 .04 RPM | 9 .60 RPM |
SRP007412_heart | 0 .06 RPM | 36 .86 RPM |
SRP007412_kidney | 0 .04 RPM | 17 .61 RPM |
SRP007412_liver | 0 .00 RPM | 23 .57 RPM |
SRP007412_testis | 0 .00 RPM | 33 .76 RPM |