RetrogeneDB ID: | retro_ocun_1765 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018863:277196..278781(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000026167 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KPNA2 | ||
Ensembl ID: | ENSOCUG00000015913 | ||
Aliases: | None | ||
Description: | karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:HGNC Symbol;Acc:6395] |
Percent Identity: | 99.25 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSTNENANSPAARLHRFKNKGKDSTE-MRRRRIEVNVELRKAKK-DDQMLKRRNVSSFPDDATSPLQENR |
MSTNENANS.AARLHRFKNKGKDSTE.MRRRRIEVNVELRKAKK.DDQMLKRRNVSSFPDDATSPLQENR | |
Retrocopy | MSTNENANSTAARLHRFKNKGKDSTE<MRRRRIEVNVELRKAKK<DDQMLKRRNVSSFPDDATSPLQENR |
Parental | NNQGTVHWSVDDIVKGITSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQF |
NNQGTVHWSVDDIVKGITSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQF | |
Retrocopy | NNQGTVHWSVDDIVKGITSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQF |
Parental | ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAIDP |
ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAIDP | |
Retrocopy | ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAIDP |
Parental | LLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHDDPEVLADTCWAISYL |
LLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHDDPEVLADTCWAISYL | |
Retrocopy | LLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHDDPEVLADTCWAISYL |
Parental | TDGPNERIEMVVKTGVVPQLVKLLGANDLPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPK |
TDGPNERIEMVVKTGVVPQLVKLLGANDLPIVT.ALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPK | |
Retrocopy | TDGPNERIEMVVKTGVVPQLVKLLGANDLPIVTSALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPK |
Parental | TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVH |
TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVH | |
Retrocopy | TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVH |
Parental | CGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYRAS |
CGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYRAS | |
Retrocopy | CGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYRAS |
Parental | LNLIEKYFSIEEEEDQNVAPETTSEGYTFQVQDGAPGAFHF |
LNLIEKYFSIEEEEDQNVAPETTSEGYTFQVQDGAPGAFHF | |
Retrocopy | LNLIEKYFSIEEEEDQNVAPETTSEGYTFQVQDGAPGAFHF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .27 RPM | 9 .22 RPM |
SRP017611_kidney | 1 .72 RPM | 11 .05 RPM |
SRP017611_liver | 0 .69 RPM | 6 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018411 | 3 retrocopies | |
Bos taurus | ENSBTAG00000012225 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000011598 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000026318 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019151 | 6 retrocopies | |
Equus caballus | ENSECAG00000020573 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000004445 | 2 retrocopies | |
Felis catus | ENSFCAG00000001936 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000027946 | 7 retrocopies | |
Macaca mulatta | ENSMMUG00000018256 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000003897 | 1 retrocopy | |
Mus musculus | ENSMUSG00000018362 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015913 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000027672 | 7 retrocopies | |
Pongo abelii | ENSPPYG00000008569 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015329 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011391 | 1 retrocopy |