RetrogeneDB ID: | retro_ocun_426 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 10:38210043..38210975(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KPNA2 | ||
Ensembl ID: | ENSOCUG00000015913 | ||
Aliases: | None | ||
Description: | karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:HGNC Symbol;Acc:6395] |
Percent Identity: | 85.71 % |
Parental protein coverage: | 58.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MSSLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIE |
.SSLAC.YL.NLT.TLSNLC.NKNPAP.LDA.EQILPTLV.LLHHDDPEVLADTCWAISYLT........ | |
Retrocopy | ISSLACSYLCNLTRTLSNLCVNKNPAPLLDAIEQILPTLVHLLHHDDPEVLADTCWAISYLTFVQMNKLQ |
Parental | -MVVKTGVVPQLVKLLGANDLPIVTPALR-AIGNIVTGTDEQTQVVIDAGALAVFPSLLTNP-KTNIQKE |
.MVVKTG.VPQLV..LG.N.LPIVTPALR.AIGNIVTGTDEQT.VVIDAGALA.FPSLLT...KTNIQKE | |
Retrocopy | <MVVKTGGVPQLVTFLGVNELPIVTPALR>AIGNIVTGTDEQT*VVIDAGALAIFPSLLTTS<KTNIQKE |
Parental | ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEP |
ATWTMSNIT.GRQDQIQQVVNH.LVPF.VGVLSKADFKTQKE.VWAVTNYTSGGT.EQ.VY.VHCGIIEP | |
Retrocopy | ATWTMSNITTGRQDQIQQVVNHRLVPFFVGVLSKADFKTQKEEVWAVTNYTSGGTDEQTVYFVHCGIIEP |
Parental | LMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYRASLNLIEK |
LMNLLTAKDTKIILVILD.ISNIFQAAEKL.ETEKLSIMIEECGGL.KIEALQN.ENESV.RASLNLIEK | |
Retrocopy | LMNLLTAKDTKIILVILDVISNIFQAAEKLSETEKLSIMIEECGGLNKIEALQNCENESVNRASLNLIEK |
Parental | YFSIEEEEDQNVAPETTSEGYTFQVQDGAPGAFHF |
YFSIEEE.DQNV.PET.SEGYTFQVQDGA.GAF.F | |
Retrocopy | YFSIEEEKDQNVVPETISEGYTFQVQDGA-GAFNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .22 RPM |
SRP017611_kidney | 0 .10 RPM | 11 .05 RPM |
SRP017611_liver | 0 .00 RPM | 6 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018411 | 3 retrocopies | |
Bos taurus | ENSBTAG00000012225 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000011598 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000026318 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019151 | 6 retrocopies | |
Equus caballus | ENSECAG00000020573 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000004445 | 2 retrocopies | |
Felis catus | ENSFCAG00000001936 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000027946 | 7 retrocopies | |
Macaca mulatta | ENSMMUG00000018256 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000003897 | 1 retrocopy | |
Mus musculus | ENSMUSG00000018362 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015913 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000027672 | 7 retrocopies | |
Pongo abelii | ENSPPYG00000008569 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015329 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011391 | 1 retrocopy |