RetrogeneDB ID: | retro_hsap_2403 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:237316546..237317430(-) | ||
Located in intron of: | ENSG00000132321 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000231546 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSG00000100316 | ||
Aliases: | RPL3, ASC-1, L3, TARBP-B | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 79.39 % |
Parental protein coverage: | 83.76 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | PRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIA- |
P.GL.TFKT.FA..ISDECK..F..NWHKSKK.AFT.YCKKWQ..DGKKQLE.DFSSMKK.CQVI.V.A. | |
Retrocopy | PQGLQTFKTIFAQYISDECKKHFSNNWHKSKKEAFTNYCKKWQNMDGKKQLEQDFSSMKKHCQVIHVTA< |
Parental | HTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSR |
HT...LLP.RQKKA.LMEIQVN.GTVA.KLDW.RERLEQ..PVNQVFGQDEMIDV..VTKGK.YKGVTS. | |
Retrocopy | HTHIYLLPPRQKKAPLMEIQVNRGTVAKKLDWGRERLEQPIPVNQVFGQDEMIDVFKVTKGKDYKGVTSH |
Parental | WHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKK-IYKIGQGYLIKDGKLIKNNA |
.HTKKLP.KTH.GLRKVA.IGAWHPA.VAFSVARAGQKGYHHRTEI....I.KIGQGYLIKD.KLIKNNA | |
Retrocopy | *HTKKLPCKTH*GLRKVAWIGAWHPACVAFSVARAGQKGYHHRTEITRRLISKIGQGYLIKDDKLIKNNA |
Parental | STDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSK |
STD.DL.DK.IN.LGGFV.YGEVT..FVMLK.CVVGTKK.VLTL.KSLL..TK.RALEK.DLKFIDTT.K | |
Retrocopy | STDHDLPDKNINSLGGFVPYGEVTSGFVMLKECVVGTKK*VLTLHKSLLAETKQRALEKTDLKFIDTTAK |
Parental | FGHGRFQTMEEKKAFM |
FGHG..QTMEEKK.FM | |
Retrocopy | FGHGCSQTMEEKKVFM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 1680 .36 RPM |
bodymap2_adrenal | 0 .00 RPM | 1617 .45 RPM |
bodymap2_brain | 0 .00 RPM | 431 .16 RPM |
bodymap2_breast | 0 .00 RPM | 1202 .87 RPM |
bodymap2_colon | 0 .00 RPM | 1954 .47 RPM |
bodymap2_heart | 0 .00 RPM | 136 .94 RPM |
bodymap2_kidney | 0 .00 RPM | 828 .19 RPM |
bodymap2_liver | 0 .00 RPM | 515 .37 RPM |
bodymap2_lung | 0 .00 RPM | 1395 .71 RPM |
bodymap2_lymph_node | 0 .00 RPM | 1623 .01 RPM |
bodymap2_ovary | 0 .00 RPM | 2926 .00 RPM |
bodymap2_prostate | 0 .00 RPM | 1872 .53 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 319 .11 RPM |
bodymap2_testis | 0 .00 RPM | 1379 .42 RPM |
bodymap2_thyroid | 0 .00 RPM | 1149 .27 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1856 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1753 |
Gorilla gorilla | retro_ggor_1822 |
Pongo abelii | retro_pabe_2167 |
Macaca mulatta | retro_mmul_973 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |