RetrogeneDB ID: | retro_mmul_973 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:100278148..100279082(-) | ||
Located in intron of: | ENSMMUG00000017404 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSMMUG00000010029 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:RefSeq peptide;Acc:NP_001180483] |
Percent Identity: | 74.44 % |
Parental protein coverage: | 87.75 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | PRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAH |
P.GL.T.KT.FA.HIS.ECK..F.KN.HKSKKKAFT.YCKKWQ..D.KKQLE.DFSSMKKYCQVI.V.AH | |
Retrocopy | PQGLQTSKTIFAKHISNECKKHFSKN*HKSKKKAFTSYCKKWQNKDSKKQLEQDFSSMKKYCQVIHVTAH |
Parental | TQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRW |
T.M.LLP.RQKKA.LMEIQVN.GTVA.KLDW.RERLEQQVPVNQVFGQDEMID...VTKGK.YKGVTS.W | |
Retrocopy | THMHLLPVRQKKAPLMEIQVNRGTVAKKLDWDRERLEQQVPVNQVFGQDEMIDIFKVTKGKDYKGVTSHW |
Parental | HTKKLPRKTHRGLRKVACIGAWHPARV-AFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNAS |
H.KKLP.KT..GL.KVA.IGAWHPA.V..FSVA..GQKGYHH.T.....I...GQGYLIKD.KLIKN.AS | |
Retrocopy | HAKKLPCKTQ*GLCKVAWIGAWHPACV>TFSVACTGQKGYHHHT-TRRSICMTGQGYLIKDDKLIKNSAS |
Parental | TDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKF |
.D.DL.DKSIN.LG.FV..GEVT.DFVMLK.CVVGTKK.VLTL.KSLL.QTK..ALEK.DLKFIDTT.KF | |
Retrocopy | ADHDLTDKSINSLGDFVP*GEVTSDFVMLKECVVGTKK*VLTLHKSLLAQTKWWALEKTDLKFIDTTAKF |
Parental | GHGRFQTMEEKK----AFMGPLKKDRIAKEEGA |
GHG..QTM.E.K.....FM.PLKKD.IA.E.GA | |
Retrocopy | GHGCSQTM*ERKYSWKVFMKPLKKDQIAIEDGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 88 .41 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 471 .22 RPM |
SRP007412_cerebellum | 0 .13 RPM | 130 .96 RPM |
SRP007412_heart | 0 .00 RPM | 122 .84 RPM |
SRP007412_kidney | 0 .00 RPM | 153 .87 RPM |
SRP007412_liver | 0 .00 RPM | 264 .62 RPM |
SRP007412_testis | 0 .11 RPM | 165 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2403 |
Pan troglodytes | retro_ptro_1753 |
Gorilla gorilla | retro_ggor_1822 |
Pongo abelii | retro_pabe_2167 |