RetrogeneDB ID: | retro_pvam_590 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_394:51033..51483(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSPVAG00000000925 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 75.48 % |
Parental protein coverage: | 92.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | YLRCTGGEVGA-TSAL-APKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASAL |
..R.T.G.V...TSAL.APKI.PL.LSPK..GDDIA.ATG.D.K.LRITVK.TIQNRQAQIEVVPSA.AL | |
Retrocopy | HMRYTSGGVSL<TSAL<APKISPLVLSPKNDGDDIARATG<DRKVLRITVKPTIQNRQAQIEVVPSAPAL |
Parental | IIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHD |
IIKALKE.P...K..KNIKHSGNI.FDE.VN.A.QM.HRSLARELSGTIKEIL.TAQS.G.NVDG.HP.D | |
Retrocopy | IIKALKELPK*-KETKNIKHSGNISFDETVNTAKQMQHRSLARELSGTIKEILETAQSMGYNVDGCHPYD |
Parental | IIDDINSGAVECPAS |
II.DI.S.AVECPAS | |
Retrocopy | IIHDIDSNAVECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |