RetrogeneDB ID: | retro_ggor_1645 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2a:86365914..86366487(+) | ||
Located in intron of: | ENSGGOG00000004046 | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000028276 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSGGOG00000000648 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.66 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ASRLSARRRPRCNFLRSSRIRVHPTPAASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKI-GPLGLSP |
A..LSA.R.PRCNFL..S.I.VH.TPA..TMPPK.DPNEIKVVYL.CTGGEV.A.S.L..KI.GPL.LSP | |
Retrocopy | ALSLSAWRKPRCNFLPVSQIWVHLTPADLTMPPKLDPNEIKVVYLSCTGGEVNASSVLSTKI>GPLRLSP |
Parental | KKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEI |
KKVGDDIAK.T.DW.GL..TVKLTIQNR.AQIEVVPSASALII.A.KEPPRDRKKQ.NIKHSGNITFDEI | |
Retrocopy | KKVGDDIAKPTSDWRGLMTTVKLTIQNREAQIEVVPSASALIIEAFKEPPRDRKKQENIKHSGNITFDEI |
Parental | VNIARQMRHRSLARELSGTIKEILGTAQSV-GCNVDGRHPHDIIDDINSGAVECPAS |
VN.A.QM.H.SLARELSGTIKEILGT.QSV.G.N.DG.H.HDI....N.GAVECPAS | |
Retrocopy | VNVAQQMQHQSLARELSGTIKEILGTSQSV<GLNLDGCHTHDI----NNGAVECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 47 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 50 .82 RPM |
SRP007412_heart | 0 .00 RPM | 35 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 164 .33 RPM |
SRP007412_liver | 0 .00 RPM | 168 .45 RPM |
SRP007412_testis | 0 .00 RPM | 81 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2123 |
Pongo abelii | retro_pabe_1982 |