RetrogeneDB ID: | retro_ggor_1511 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 20:39211833..39212414(+) | ||
Located in intron of: | ENSGGOG00000013123 | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000026576 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSGGOG00000000648 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80. % |
Parental protein coverage: | 98.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LSARRRPRCNFLRSSRI-RVHPTPAASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKV |
L.A.RRPRCNF..SS.I.R.H.T.AASTM..KFDPNEI.VVYLRC.GGEV.A.SALAP.I.PLGLSPKKV | |
Retrocopy | LPAQRRPRCNFFQSS*I<RIHLTQAASTMLLKFDPNEIRVVYLRCIGGEVDAMSALAPRIRPLGLSPKKV |
Parental | GDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNI |
.DDIAKAT.DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPP.DRKKQKNIKHSGNITFDEIVN. | |
Retrocopy | DDDIAKATSDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPIDRKKQKNIKHSGNITFDEIVNT |
Parental | ARQMRHRSLARELSGTIKEILGTAQSVGC--NVDGRHPHDIIDDINSGAVECPAS |
ARQM.H.SLARE.SGTIKE.LGT.....C..NVDG..PHDI.D.INS..VECP.S | |
Retrocopy | ARQMQHQSLAREVSGTIKELLGTDYCPVCVCNVDGHYPHDIMDGINSAVVECPTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .14 RPM | 47 .14 RPM |
SRP007412_cerebellum | 0 .04 RPM | 50 .82 RPM |
SRP007412_heart | 0 .00 RPM | 35 .96 RPM |
SRP007412_kidney | 0 .04 RPM | 164 .33 RPM |
SRP007412_liver | 0 .05 RPM | 168 .45 RPM |
SRP007412_testis | 0 .21 RPM | 81 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2428 |