RetrogeneDB ID: | retro_sscr_551 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 16:54730812..54731165(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSSSCG00000005612 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.11 % |
Parental protein coverage: | 63.87 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | DDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIA |
DD..K.TG.WK.L.IT.KLTIQNR.AQ.EV..SAS.LI.K.LKEPPRDRKKQ.N.KHSGNITFDE.VN.A | |
Retrocopy | DDMTKKTGYWKSLQITEKLTIQNREAQTEVIYSASDLITKVLKEPPRDRKKQTNGKHSGNITFDEVVNVA |
Parental | RQMRHRSLARELSGTIKEILGTAQSVGCN-VDGRHPHDIIDDINSGAVECPAS |
.QM.H.SLARELS..IK.ILGTA.SV..N...G.HPHDI....NSG..E.PAS | |
Retrocopy | *QMQHWSLARELSKNIKGILGTA*SVS*N<LGGHHPHDI----NSGTIEYPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 238 .25 RPM |
SRP014902_testis | 0 .00 RPM | 576 .25 RPM |
SRP018288_heart | 0 .00 RPM | 184 .80 RPM |
SRP018288_kidney | 0 .00 RPM | 195 .24 RPM |
SRP018288_liver | 0 .00 RPM | 156 .39 RPM |
SRP018288_lung | 0 .00 RPM | 181 .56 RPM |
SRP018856_adipose | 0 .00 RPM | 390 .17 RPM |
SRP035408_brain | 0 .00 RPM | 261 .64 RPM |
SRP035408_liver | 0 .00 RPM | 168 .27 RPM |