RetrogeneDB ID: | retro_pvam_209 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1884:1326773..1327146(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSPVAG00000000925 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 57.03 % |
Parental protein coverage: | 75.15 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | PLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIE--VVPSASALIIKALKEPP-RDRKKQK-NIK |
P.GL..KK.G.DI.KA.G.W.GL.ITV.LTIQN.Q.Q.E...V.SASAL.I......P...R.KQK.NIK | |
Retrocopy | PWGLCSKKIGNDIVKAAGVWEGLKITVELTIQNTQTQTEHTEVRSASAL-ISSVCKEP<TQR*KQK<NIK |
Parental | HSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINS |
...N.TFD..VNI...M.H.S.ARELSG.IKE.LG.AQS..CNV.G....DIIDD... | |
Retrocopy | LHRNTTFDDTVNIV*PMQHLSVARELSGNIKEVLGIAQS*DCNVNGYCLYDIIDDVTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |