RetrogeneDB ID: | retro_ggor_2334 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:38125811..38126387(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000026602 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSGGOG00000000648 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.06 % |
Parental protein coverage: | 98.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LSARRRPRCNFLRSSRIRVHPTPAASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVG |
LSA.RRPRC.FL..SRI.VHPTPA.STM.PKFDP.EIKVVYLRCTGGEVGA.SAL.PKIGPL.LSPKK.G | |
Retrocopy | LSAQRRPRCTFLQRSRIWVHPTPATSTMWPKFDPTEIKVVYLRCTGGEVGAMSALGPKIGPLDLSPKKSG |
Parental | DDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIA |
DDIAKA.GDWKGLRITVKLTI.NRQAQIEVVPSASALIIKAL.EPPRDRKKQKNI.H.GNITFDEIVN.A | |
Retrocopy | DDIAKAMGDWKGLRITVKLTIENRQAQIEVVPSASALIIKALNEPPRDRKKQKNIQHNGNITFDEIVNVA |
Parental | RQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS |
.QMRHRSLAR.L.GTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS | |
Retrocopy | PQMRHRSLARDLTGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 47 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 50 .82 RPM |
SRP007412_heart | 0 .00 RPM | 35 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 164 .33 RPM |
SRP007412_liver | 0 .00 RPM | 168 .45 RPM |
SRP007412_testis | 0 .00 RPM | 81 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3458 |
Pongo abelii | retro_pabe_2859 |