RetrogeneDB ID: | retro_pvam_687 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_702:255549..255952(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSPVAG00000000925 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 69.34 % |
Parental protein coverage: | 81.82 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | FDPNEVK-VVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIE- |
F..N..K..VYLRC..GE..ATSALA.KI.PL.LS..K.G.DI.KAT.D.KGLRI.V..TIQNR.AQIE. | |
Retrocopy | FNSNNIK<IVYLRCLSGEISATSALATKICPLSLSLIKFGGDITKATSD*KGLRIVVDVTIQNREAQIE< |
Parental | VVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSV |
V...AS.LIIK.LKEP.RDRK.QKNIKHSGN.T.DEIVNIA.QM...SLAREL.GT.KEILG.A.SV | |
Retrocopy | VATPASVLIIKVLKEPLRDRKNQKNIKHSGNVTVDEIVNIA*QMWY*SLARELFGTLKEILGAARSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |