RetrogeneDB ID:

retro_tbel_3343

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:scaffold_137794:43385..43610(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTBEG00000001443
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_tbel_3343
ATGGCTTTCACCCTGTACACAATGCTCCTGGTGGCTCTGCTCGGCGTCAACGTCATTGCCTGGCTGCGCAAGGAGTGCTT
CCTTAAGAACATTGGCTGGGGAACAGATCAGGGAATTGGTGGATTCCAAGAAGAGCCAGGAATTAAATTTCAGCAAGTGA
AACTAATTCGATCTGTAAGAACTGTGATAAGAGTTCCATTGATCATAGTAAACTCAATTGAAGTT

ORF - retro_tbel_3343 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.33 %
Parental protein coverage: 91.46 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAFTLYSLLQAALLCVNAIAVLHEERFLKNIGWATDQGIGGFGEEPGIKSQLMNLIRSVRTVMRVPLIIV
MAFTLY..L..ALL.VN.IA.L..E.FLKNIGW.TDQGIGGF.EEPGIK.Q...LIRSVRTV.RVPLIIV
RetrocopyMAFTLYTMLLVALLGVNVIAWLRKECFLKNIGWGTDQGIGGFQEEPGIKFQQVKLIRSVRTVIRVPLIIV
ParentalNSVAI
NS...
RetrocopyNSIEV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_3343 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_3343 was not experimentally validated.

Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 17 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000329611 retrocopy
Callithrix jacchus ENSCJAG000000046101 retrocopy
Echinops telfairi ENSETEG000000003031 retrocopy
Homo sapiens ENSG000001340491 retrocopy
Gorilla gorilla ENSGGOG000000279391 retrocopy
Mus musculus ENSMUSG000000900001 retrocopy
Nomascus leucogenys ENSNLEG000000114501 retrocopy
Otolemur garnettii ENSOGAG000000166261 retrocopy
Pongo abelii ENSPPYG000000091413 retrocopies
Pan troglodytes ENSPTRG000000100021 retrocopy
Tupaia belangeri ENSTBEG00000001443 4 retrocopies
Tursiops truncatus ENSTTRG000000010191 retrocopy



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