RetrogeneDB ID: | retro_vpac_302 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_575:976175..976614(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL29 | ||
Ensembl ID: | ENSVPAG00000001282 | ||
Aliases: | None | ||
Description: | ribosomal protein L29 [Source:HGNC Symbol;Acc:10331] |
Percent Identity: | 73.83 % |
Parental protein coverage: | 92.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | AKSKNHTTHNQ-SRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAMSARAE |
AKSKNHT.HN..SRKWHRN.I..P.SQ.Y.S.KGVD.KFLRNM..AKKHNKKGLKKMQANNAKAMSA.A. | |
Retrocopy | AKSKNHTMHNR<SRKWHRNSIQNP*SQ*YKSIKGVDLKFLRNMCLAKKHNKKGLKKMQANNAKAMSACAG |
Parental | AIKALVKPKEVKPKIPKGSSRKLSRLAYIAHPKLGKRARARIAKGLRLCRPKAKDKAQTKAAA-TAPAPA |
AIK.L.KPKEVKPKI..G.SR.LSRLAYIAHPKL.KR..A.IAKGLRLC.PKAK.....KAAA..A.A.A | |
Retrocopy | AIKVLIKPKEVKPKILQGHSRRLSRLAYIAHPKLRKRVSAHIAKGLRLCWPKAKAQTKAKAAA<EALAQA |
Parental | PAPAPAQSP |
.AP..AQ.P | |
Retrocopy | QAPKGAQAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |