RetrogeneDB ID: | retro_fcat_1897 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:18289003..18289247(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000001762 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.67 % |
Parental protein coverage: | 50.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAKSKNHTT-HNQSRKWHRNGIK-KPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAMSAR |
M..SKNH...H.QSRK..RN.IK..P.SQRYESLKGV..KFL.NM.F..KHN.KGLKKM..N.A.AM.AR | |
Retrocopy | MVMSKNHPC<HSQSRKRYRNSIK<EPQSQRYESLKGVGFKFLMNMHFTQKHNEKGLKKM*TNPAMAMNAR |
Parental | AEAIKALVKPKEVK |
AEAI.ALV.PK..K | |
Retrocopy | AEAISALVQPKILK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 68 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 325 .66 RPM |
SRP017611_liver | 0 .00 RPM | 156 .99 RPM |