RetrogeneDB ID: | retro_fcat_1132 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:145184445..145184868(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000001762 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.14 % |
Parental protein coverage: | 88.2 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | AKSKNHTTHNQSRKWHRNGIKK-PRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAMSARAE |
AKSKNHT.HNQS.KWHRN..KK...SQRYESL..VDP..LRNM.FAKKH.KKGLKKMQANNA..MSA.A. | |
Retrocopy | AKSKNHTMHNQS*KWHRNSMKK<AQSQRYESLRRVDPNILRNMHFAKKHDKKGLKKMQANNANTMSAHAR |
Parental | -AIKALVKPKEVKP-KIPKGGSRKLNRLAYIAHPKLGKRARARIAKGLRLCRPKAKAKAQTKAQPAAATP |
.AIK.LV.PKEVK...IPKGGSRKLN.L..I.H.KL.K..R..IAK.LRL.....KA.....AQ...... | |
Retrocopy | <AIKTLVEPKEVKS<HIPKGGSRKLNQLDHISHLKLWKHDRTYIAKSLRLW*TESKAQTLAMAQTPKGD* |
Parental | APAPA |
AP..A | |
Retrocopy | APIKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 68 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 325 .66 RPM |
SRP017611_liver | 0 .00 RPM | 156 .99 RPM |