RetrogeneDB ID: | retro_rnor_2356 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:39736606..39737074(-) | ||
Located in intron of: | ENSRNOG00000046741 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl29 | ||
Ensembl ID: | ENSRNOG00000011138 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L29 [Source:UniProtKB/Swiss-Prot;Acc:P25886] |
Percent Identity: | 89.74 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAVSARAE |
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRN..FAKK.NKKGLKKMQANNAKAVSA.AE | |
Retrocopy | MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNTHFAKKRNKKGLKKMQANNAKAVSA*AE |
Parental | AIKALVKPQAVKPKMPKGSSRKLSRLAFIAHPKLGKKIRSYMAKGRRLCQPKPKVQTKAEAKAPAKAQAK |
AIKALV.PQAVKPK.PK.SS.KLS.LAFIAHPKL.K...SYMAKG.RLCQPKPKVQTKAEAKAPAKAQ.. | |
Retrocopy | AIKALVNPQAVKPKIPKSSSHKLSCLAFIAHPKLEKRTQSYMAKGQRLCQPKPKVQTKAEAKAPAKAQVS |
Parental | APAQAPKGAQAPVKAP |
APAQAPKGAQAPVKAP | |
Retrocopy | APAQAPKGAQAPVKAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 73 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 112 .84 RPM |
SRP017611_liver | 0 .07 RPM | 62 .60 RPM |