RetrogeneDB ID: | retro_fcat_952 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:39936708..39937132(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000001762 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.59 % |
Parental protein coverage: | 95.65 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKG-VDPKFLRNMRFAKKHNKKGLKKMQANNAKAMSARA |
MAKSKNHT.HNQS.KWHRNGIKKP..QRY.SL.G.V.P.FLRN..FA.KH.KKGLKK.Q..NAKA.SA.. | |
Retrocopy | MAKSKNHTIHNQSQKWHRNGIKKPHLQRY*SLDG<VGPEFLRNVHFARKH-KKGLKKVQ-DNAKAKSACV |
Parental | EAIKALVKPKEVKPKI-PKGGSRKLNRLAYIAHPKLGKRARARIAKGLRLCRPKAKAKAQTKAQPAAATP |
..IKA..K.KEVKPKI.PKG.....N..AYIAHP.LGKR..A.IAKGLRLC.PK.KAKAQTK....A..P | |
Retrocopy | KSIKAHNKTKEVKPKI<PKGRN---NKFAYIAHPMLGKRGHACIAKGLRLCGPKSKAKAQTK---TALAP |
Parental | APAPAAAQAQAPKGAQ |
APA.A....QAPKGAQ | |
Retrocopy | APAVA----QAPKGAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 68 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 325 .66 RPM |
SRP017611_liver | 0 .00 RPM | 156 .99 RPM |