RetrogeneDB ID: | retro_mdom_1532 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 5:140725605..140725876(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000028750 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.12 % |
Parental protein coverage: | 63.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VKMAKSKNHTT-HNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAIKA |
V.MAK.K.HT..HNQ...WHRNGIKKP.S.RY.SLKGVD.KFLRNM.F.K.....GLKKM.AN......A | |
Retrocopy | VRMAKPKKHTL>HNQ---WHRNGIKKPKSPRYKSLKGVDLKFLRNMCFDKR----GLKKMWANSVQGLTA |
Parental | RAEAIKALSTKASKAKLLRPKISKANAR |
...AI..L.T...K..LL.PKI.K.... | |
Retrocopy | *T*AINVLTTMVVKSELLMPKIIKSSGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |