RetrogeneDB ID: | retro_cfam_1439 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 31:23743322..23743609(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D2 | ||
Ensembl ID: | ENSCAFG00000031041 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 2 [Source:HGNC Symbol;Acc:12475] |
Percent Identity: | 62.89 % |
Parental protein coverage: | 63.95 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | DDMFHWQATIMGPNDSPYQGGVF-FLTIHFPTDYPFKPP--KVAFTTRIYHPNINSNGSICLDILRSQWS |
.D..HWQA.IM.PNDSP.Q..V..FLTIHFP...P.K.P...VAF.TR..H..INSNGS..L..LRSQ.. | |
Retrocopy | EDICHWQAKIMRPNDSPCQYAVY<FLTIHFPMHWPCKLP*GVVAFITRRHHSSINSNGSTGLNFLRSQ*L |
Parental | PALTISKVLLSICSLLCDPNPDDPLVP |
P.L..S.VLLS..SLLCDPNPDDP.VP | |
Retrocopy | PVLAVSEVLLSLFSLLCDPNPDDPVVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 86 .77 RPM |
SRP017611_brain | 0 .00 RPM | 76 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 50 .06 RPM |
SRP017611_liver | 0 .00 RPM | 18 .06 RPM |