RetrogeneDB ID: | retro_cfam_1602 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 36:22245393..22245638(-) | ||
Located in intron of: | ENSCAFG00000014025 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D2 | ||
Ensembl ID: | ENSCAFG00000031041 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 2 [Source:HGNC Symbol;Acc:12475] |
Percent Identity: | 63.1 % |
Parental protein coverage: | 55.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | CSAGPVGDDMFHW-QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDI |
C..GPV....F...QAT.MGPNDSPY..GVFF.T.HFPTD..FKPPKVAF.TRI.HP.INS..GS.CL.I | |
Retrocopy | CEDGPVSVG*FSVVQATTMGPNDSPYECGVFFWTRHFPTDSLFKPPKVAFRTRISHPDINS<LGSLCLNI |
Parental | LRSQWSPALTISKV |
LRS.W...L....V | |
Retrocopy | LRS-WNYSLLYAVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 86 .77 RPM |
SRP017611_brain | 0 .00 RPM | 76 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 50 .06 RPM |
SRP017611_liver | 0 .07 RPM | 18 .06 RPM |